Package: TDCor 0.1-2

TDCor: Gene Network Inference from Time-Series Transcriptomic Data

The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data. The algorithm is described in details in Lavenus et al., Plant Cell, 2015. It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana. The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.

Authors:Julien Lavenus

TDCor_0.1-2.tar.gz
TDCor_0.1-2.zip(r-4.5)TDCor_0.1-2.zip(r-4.4)TDCor_0.1-2.zip(r-4.3)
TDCor_0.1-2.tgz(r-4.4-any)TDCor_0.1-2.tgz(r-4.3-any)
TDCor_0.1-2.tar.gz(r-4.5-noble)TDCor_0.1-2.tar.gz(r-4.4-noble)
TDCor_0.1-2.tgz(r-4.4-emscripten)TDCor_0.1-2.tgz(r-4.3-emscripten)
TDCor.pdf |TDCor.html✨
TDCor/json (API)

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

9 exports 0.36 score 1 dependencies 1 mentions 20 scripts 135 downloads

Last updated 9 years agofrom:56cb383764. Checks:OK: 7. Indexed: yes.

Exports:CalculateDPICalculateTPIclean.atdraw.profileestimate.delayshortest.pathTDCORUpdateDPIUpdateTPI

Dependencies:deSolve